biorad apparatus Search Results


biodot sf microfiltration apparatus  (Bio-Rad)
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Bio-Rad semidry blotting apparatus
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biorad turbo transfer apparatus  (Bio-Rad)
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Bio-Rad biorad turbo transfer apparatus
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Bio-Rad icycler biorad equipment
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Bio-Rad biorad geldoc apparatus
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Bio-Rad chef mapper drii apparatus
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prepcell apparatus  (Bio-Rad)
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Bio-Rad prepcell apparatus
Prepcell Apparatus, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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mini sub cell gt cell mini agarose gel apparatus  (Bio-Rad)
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protean ii xi cell electrophoresis apparatus  (Bio-Rad)
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Bio-Rad protean ii xi cell electrophoresis apparatus
( A ) Workflow for UPLC-MS/MS analysis of individual tRNAs. Separation of bulk tRNA by reversed-phase liquid chromatography (RP-LC) and 2D-PAGE of each fraction enabled isolation of all tRNA species. Cyanoethylation prior to <t>electrophoresis</t> revealed potential Ψ sites and allowed detection of s 4 U. Digestion with RNases T1, A, and U2 provided near-complete sequence coverage. Several deep-sequencing methods were applied to bulk tRNAs: RMS (RiboMethSeq), AAS (AlkAnilineSeq), GLORI (glyoxal/nitrite A deamination), HPS (HydraPsiSeq), BID (bisulfite-induced deletion). ( B to G ) Deconvoluted CID-MS/MS spectra of tRNA fragments containing modified nucleosides. The corresponding tRNA, RNase employed, and precursor ion (mass and charge) are indicated. Relevant y - and c -product ions are labeled. Insets show deep-sequencing signals. ( B ) [ce-s 4 U]8 in tRNA Trp (CCA), also detected by RT-signature. ( C ) [D]20 and [m 1 A]22 in tRNA Cys (GCA), confirmed by AAS and GLORI, respectively. ( D ) Modifications in the anticodon loop of tRNA Leu (UAA). RMS detected [Um]34, and Ψ (likely 39) was supported by HPS and BID. ( E ) [k 2 C]34 and [m 6 A]37 in tRNA Ile (CAU), also detected by AAS and GLORI, respectively. ( F ) [m 7 G]46 in tRNA Ala (UGC), validated by AAS. ( G ) [m 5 U]54 and [Ψ]55 in tRNA Ser (UGA). HPS detected both, while BID misassigned Ψ to -1 due to consecutive T54 and T55.
Protean Ii Xi Cell Electrophoresis Apparatus, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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tetra cell electrophoresis apparatus  (Bio-Rad)
99
Bio-Rad tetra cell electrophoresis apparatus
( A ) Workflow for UPLC-MS/MS analysis of individual tRNAs. Separation of bulk tRNA by reversed-phase liquid chromatography (RP-LC) and 2D-PAGE of each fraction enabled isolation of all tRNA species. Cyanoethylation prior to <t>electrophoresis</t> revealed potential Ψ sites and allowed detection of s 4 U. Digestion with RNases T1, A, and U2 provided near-complete sequence coverage. Several deep-sequencing methods were applied to bulk tRNAs: RMS (RiboMethSeq), AAS (AlkAnilineSeq), GLORI (glyoxal/nitrite A deamination), HPS (HydraPsiSeq), BID (bisulfite-induced deletion). ( B to G ) Deconvoluted CID-MS/MS spectra of tRNA fragments containing modified nucleosides. The corresponding tRNA, RNase employed, and precursor ion (mass and charge) are indicated. Relevant y - and c -product ions are labeled. Insets show deep-sequencing signals. ( B ) [ce-s 4 U]8 in tRNA Trp (CCA), also detected by RT-signature. ( C ) [D]20 and [m 1 A]22 in tRNA Cys (GCA), confirmed by AAS and GLORI, respectively. ( D ) Modifications in the anticodon loop of tRNA Leu (UAA). RMS detected [Um]34, and Ψ (likely 39) was supported by HPS and BID. ( E ) [k 2 C]34 and [m 6 A]37 in tRNA Ile (CAU), also detected by AAS and GLORI, respectively. ( F ) [m 7 G]46 in tRNA Ala (UGC), validated by AAS. ( G ) [m 5 U]54 and [Ψ]55 in tRNA Ser (UGA). HPS detected both, while BID misassigned Ψ to -1 due to consecutive T54 and T55.
Tetra Cell Electrophoresis Apparatus, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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tetra cell electrophoresis apparatus - by Bioz Stars, 2026-03
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biorad mini protean ii apparatus  (Bio-Rad)
96
Bio-Rad biorad mini protean ii apparatus
( A ) Workflow for UPLC-MS/MS analysis of individual tRNAs. Separation of bulk tRNA by reversed-phase liquid chromatography (RP-LC) and 2D-PAGE of each fraction enabled isolation of all tRNA species. Cyanoethylation prior to <t>electrophoresis</t> revealed potential Ψ sites and allowed detection of s 4 U. Digestion with RNases T1, A, and U2 provided near-complete sequence coverage. Several deep-sequencing methods were applied to bulk tRNAs: RMS (RiboMethSeq), AAS (AlkAnilineSeq), GLORI (glyoxal/nitrite A deamination), HPS (HydraPsiSeq), BID (bisulfite-induced deletion). ( B to G ) Deconvoluted CID-MS/MS spectra of tRNA fragments containing modified nucleosides. The corresponding tRNA, RNase employed, and precursor ion (mass and charge) are indicated. Relevant y - and c -product ions are labeled. Insets show deep-sequencing signals. ( B ) [ce-s 4 U]8 in tRNA Trp (CCA), also detected by RT-signature. ( C ) [D]20 and [m 1 A]22 in tRNA Cys (GCA), confirmed by AAS and GLORI, respectively. ( D ) Modifications in the anticodon loop of tRNA Leu (UAA). RMS detected [Um]34, and Ψ (likely 39) was supported by HPS and BID. ( E ) [k 2 C]34 and [m 6 A]37 in tRNA Ile (CAU), also detected by AAS and GLORI, respectively. ( F ) [m 7 G]46 in tRNA Ala (UGC), validated by AAS. ( G ) [m 5 U]54 and [Ψ]55 in tRNA Ser (UGA). HPS detected both, while BID misassigned Ψ to -1 due to consecutive T54 and T55.
Biorad Mini Protean Ii Apparatus, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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bio dot microfiltration apparatus  (Bio-Rad)
99
Bio-Rad bio dot microfiltration apparatus
( A ) Workflow for UPLC-MS/MS analysis of individual tRNAs. Separation of bulk tRNA by reversed-phase liquid chromatography (RP-LC) and 2D-PAGE of each fraction enabled isolation of all tRNA species. Cyanoethylation prior to <t>electrophoresis</t> revealed potential Ψ sites and allowed detection of s 4 U. Digestion with RNases T1, A, and U2 provided near-complete sequence coverage. Several deep-sequencing methods were applied to bulk tRNAs: RMS (RiboMethSeq), AAS (AlkAnilineSeq), GLORI (glyoxal/nitrite A deamination), HPS (HydraPsiSeq), BID (bisulfite-induced deletion). ( B to G ) Deconvoluted CID-MS/MS spectra of tRNA fragments containing modified nucleosides. The corresponding tRNA, RNase employed, and precursor ion (mass and charge) are indicated. Relevant y - and c -product ions are labeled. Insets show deep-sequencing signals. ( B ) [ce-s 4 U]8 in tRNA Trp (CCA), also detected by RT-signature. ( C ) [D]20 and [m 1 A]22 in tRNA Cys (GCA), confirmed by AAS and GLORI, respectively. ( D ) Modifications in the anticodon loop of tRNA Leu (UAA). RMS detected [Um]34, and Ψ (likely 39) was supported by HPS and BID. ( E ) [k 2 C]34 and [m 6 A]37 in tRNA Ile (CAU), also detected by AAS and GLORI, respectively. ( F ) [m 7 G]46 in tRNA Ala (UGC), validated by AAS. ( G ) [m 5 U]54 and [Ψ]55 in tRNA Ser (UGA). HPS detected both, while BID misassigned Ψ to -1 due to consecutive T54 and T55.
Bio Dot Microfiltration Apparatus, supplied by Bio-Rad, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


( A ) Workflow for UPLC-MS/MS analysis of individual tRNAs. Separation of bulk tRNA by reversed-phase liquid chromatography (RP-LC) and 2D-PAGE of each fraction enabled isolation of all tRNA species. Cyanoethylation prior to electrophoresis revealed potential Ψ sites and allowed detection of s 4 U. Digestion with RNases T1, A, and U2 provided near-complete sequence coverage. Several deep-sequencing methods were applied to bulk tRNAs: RMS (RiboMethSeq), AAS (AlkAnilineSeq), GLORI (glyoxal/nitrite A deamination), HPS (HydraPsiSeq), BID (bisulfite-induced deletion). ( B to G ) Deconvoluted CID-MS/MS spectra of tRNA fragments containing modified nucleosides. The corresponding tRNA, RNase employed, and precursor ion (mass and charge) are indicated. Relevant y - and c -product ions are labeled. Insets show deep-sequencing signals. ( B ) [ce-s 4 U]8 in tRNA Trp (CCA), also detected by RT-signature. ( C ) [D]20 and [m 1 A]22 in tRNA Cys (GCA), confirmed by AAS and GLORI, respectively. ( D ) Modifications in the anticodon loop of tRNA Leu (UAA). RMS detected [Um]34, and Ψ (likely 39) was supported by HPS and BID. ( E ) [k 2 C]34 and [m 6 A]37 in tRNA Ile (CAU), also detected by AAS and GLORI, respectively. ( F ) [m 7 G]46 in tRNA Ala (UGC), validated by AAS. ( G ) [m 5 U]54 and [Ψ]55 in tRNA Ser (UGA). HPS detected both, while BID misassigned Ψ to -1 due to consecutive T54 and T55.

Journal: bioRxiv

Article Title: Complete post-transcriptional modification profiles in individual Staphylococcus aureus tRNA species

doi: 10.1101/2025.10.30.685614

Figure Lengend Snippet: ( A ) Workflow for UPLC-MS/MS analysis of individual tRNAs. Separation of bulk tRNA by reversed-phase liquid chromatography (RP-LC) and 2D-PAGE of each fraction enabled isolation of all tRNA species. Cyanoethylation prior to electrophoresis revealed potential Ψ sites and allowed detection of s 4 U. Digestion with RNases T1, A, and U2 provided near-complete sequence coverage. Several deep-sequencing methods were applied to bulk tRNAs: RMS (RiboMethSeq), AAS (AlkAnilineSeq), GLORI (glyoxal/nitrite A deamination), HPS (HydraPsiSeq), BID (bisulfite-induced deletion). ( B to G ) Deconvoluted CID-MS/MS spectra of tRNA fragments containing modified nucleosides. The corresponding tRNA, RNase employed, and precursor ion (mass and charge) are indicated. Relevant y - and c -product ions are labeled. Insets show deep-sequencing signals. ( B ) [ce-s 4 U]8 in tRNA Trp (CCA), also detected by RT-signature. ( C ) [D]20 and [m 1 A]22 in tRNA Cys (GCA), confirmed by AAS and GLORI, respectively. ( D ) Modifications in the anticodon loop of tRNA Leu (UAA). RMS detected [Um]34, and Ψ (likely 39) was supported by HPS and BID. ( E ) [k 2 C]34 and [m 6 A]37 in tRNA Ile (CAU), also detected by AAS and GLORI, respectively. ( F ) [m 7 G]46 in tRNA Ala (UGC), validated by AAS. ( G ) [m 5 U]54 and [Ψ]55 in tRNA Ser (UGA). HPS detected both, while BID misassigned Ψ to -1 due to consecutive T54 and T55.

Article Snippet: The second dimension was performed using a semidenaturing 20% polyacrylamide gel in 1X TBE buffer containing 4.15 M urea, cast between two 16 x 20 cm glass plates compatible with the Protean II xi Cell electrophoresis apparatus (BioRad).

Techniques: Tandem Mass Spectroscopy, Reversed-phase Chromatography, Isolation, Electrophoresis, Sequencing, Modification, Labeling